Tél. : (+594) 5 94 32 92 89
Fax : (+594) 5 94 32 43 02
email : Hadrien.Lalague chez EcoFoG.gf
Situation actuelle
Post-doctorant à l’UMR EcoFoG.
Publications pour EcoFoG
Salas-Lopez, A., S. Talaga, and H. Lalague. "The discovery of devil's gardens: An ant-plant mutualism in the cloud forests of the Eastern Amazon." Journal of Tropical Ecology. 32.3 (2016): 264–268.
Abstract: Devil's gardens are one of the most remarkable mutualistic associations between ants and plants. Myrmelachista ants eliminate all vegetation from around their host plants, resulting in wide forest clearings which have intrigued scientists from the start. Despite their noticeability, here we report the discovery of devil's gardens in remote highland cloud forests of the Eastern Amazon, more than 2000 km away from their nearest known analogues in Western Amazonia. We describe the ecological characteristics of these gardens and consider what factors could have produced the geographic isolation of Eastern Amazonian devil's gardens. Three hypotheses are investigated: (1) the host plant distribution restricts the distribution of the mutualism, (2) the ecological tolerances of Myrmelachista explain the isolation, and (3) the devil's gardens of the Eastern Amazon constitute relicts from ancient forest refugia. The distribution of the possible associated myrmecophytes and previously described ecological ranges of devil's gardens cannot explain their ecological restriction to cloud forests in Eastern Amazonia, but our discovery is consistent with the biogeographic refuge hypothesis (i.e. highlands along the Amazon Basin constitute refugia for humid forests that spread during the Cenozoic). Our finding opens exciting perspectives for comparative studies of the origin, ecology and evolutionary history of this ant-plant mutualism. Copyright © Cambridge University Press 2016.
Keywords: ant-plant interactions; biogeography; cloud forest; Cordia nodosa; mutualism, Myrmelachista; refuge hypothesis
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Scotti, I., et al. "Fifty years of genetic studies: what to make of the large amounts of variation found within populations?" Annals of Forest Science. 73.1 (2016): 69–75.
Keywords: Intra-specific variation; Microgeography; Natural selection; Population genomics
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Lalague, H., et al. "Nucleotide diversity and linkage disequilibrium at 58 stress response and phenology candidate genes in a European beech (Fagus sylvatica L.) population from southeastern France." Tree Genetics and Genomes. 10.1 (2014): 15–26.
Abstract: European beech (Fagus sylvatica L.) is one of the most economically and ecologically important deciduous trees in Europe, yet little is known about its genomic diversity and its adaptive potential. Here, we detail the discovery and analysis of 573 single nucleotide polymorphisms (SNPs) from 58 candidate gene fragments that are potentially involved in abiotic stress response and budburst phenology using a panel of 96 individuals from southeastern France. The mean nucleotide diversity was low (θ π = 2.2 × 10-3) but extremely variable among gene fragments (range from 0.02 to 10), with genes carrying insertion/deletion mutations exhibiting significantly higher diversity. The decay of linkage disequilibrium (LD) measured at gene fragments >800 base pairs was moderate (the half distance of r 2 was 154 bp), consistent with the low average population-scaled recombination rate (ρ = 5.4 × 10-3). Overall, the population-scaled recombination rate estimated in F. sylvatica was lower than for other angiosperm tree genera (such as Quercus or Populus) and similar to conifers. As a methodological perspective, we explored the effect of minimum allele frequency (MAF) on LD and showed that higher MAF resulted in slower decay of LD. It is thus essential that the same MAF is used when comparing the decay of LD among different studies and species. Our results suggest that genome-wide association mapping can be a potentially efficient approach in F. sylvatica, which has a relatively small genome size. © 2013 Springer-Verlag Berlin Heidelberg.
Keywords: Climate adaptation; Effective population size; Forest tree; Genomic diversity; Minor allele frequency (MAF); Recombination rate; Single nucleotide polymorphism (SNP)
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Csilléry, K., et al. "Detecting short spatial scale local adaptation and epistatic selection in climate-related candidate genes in European beech (Fagus sylvatica) populations." Molecular Ecology. 23.19 (2014): 4696–4708.
Abstract: Detecting signatures of selection in tree populations threatened by climate change is currently a major research priority. Here, we investigated the signature of local adaptation over a short spatial scale using 96 European beech (Fagus sylvatica L.) individuals originating from two pairs of populations on the northern and southern slopes of Mont Ventoux (south-eastern France). We performed both single and multilocus analysis of selection based on 53 climate-related candidate genes containing 546 SNPs. FST outlier methods at the SNP level revealed a weak signal of selection, with three marginally significant outliers in the northern populations. At the gene level, considering haplotypes as alleles, two additional marginally significant outliers were detected, one on each slope. To account for the uncertainty of haplotype inference, we averaged the Bayes factors over many possible phase reconstructions. Epistatic selection offers a realistic multilocus model of selection in natural populations. Here, we used a test suggested by Ohta based on the decomposition of the variance of linkage disequilibrium. Overall populations, 0.23% of the SNP pairs (haplotypes) showed evidence of epistatic selection, with nearly 80% of them being within genes. One of the between gene epistatic selection signals arose between an FST outlier and a nonsynonymous mutation in a drought response gene. Additionally, we identified haplotypes containing selectively advantageous allele combinations which were unique to high or low elevations and northern or southern populations. Several haplotypes contained nonsynonymous mutations situated in genes with known functional importance for adaptation to climatic factors.
Keywords: abiotic stress; budburst phenology; FST outlier; gene network; haplotype; Ohta's test; variance components of linkage disequilibrium
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Vedel, V., and H. Lalague. "Standardized sampling protocol for spider community assessment in the Neotropical rainforest." J. Entomol. Zool. Stud.. 2.1 (2013): 18–34.
Abstract: We described, here, a standardized protocol to collect the maximum number of spiders per unit of effort from the different strata of a tropical forestry habitat. This would allow quantifying the richness of a site and would allow spatial and temporal comparisons between sites. This protocol was tested and applied in a pilot study at four sites representing three different forestry habitats of the natural reserve of La Trinité (French Guiana). Results showed every feeding guild was well represented and most of the 30 families found are represented by several individuals. Indices of species richness, number of singletons, species richness estimators from the accumulation curves and diversity and similarity indices were also calculated and all indicated that La Trinité is a rich and diverse site for spiders. The standardized protocol showed here its efficiency and its wide cover of micro-habitats and is, therefore, recommended for any impact assessment or diversity of spider study in tropical forestry environment.
Keywords: Araneae; Biodiversity; French Guiana; Guianese Shield; Impact Assessment
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